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Modular, Multi-Input Transcriptional Logic Gating with Orthogonal LacI/GalR Family Chimeras

机译:具有正交LacI / GalR系列嵌合体的模块化,多输入转录逻辑门控

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摘要

In prokaryotes, the construction of synthetic, multi-input promoters is constrained by the number of transcription factors that can simultaneously regulate a single promoter. This fundamental engineering constraint is an obstacle to synthetic biologists because it limits the computational capacity of engineered gene circuits. Here, we demonstrate that complex multi-input transcriptional logic gating can be achieved through the use of ligand-inducible chimeric transcription factors assembled from the LacI/GalR family. These modular chimeras each contain a ligand-binding domain and a DNA-binding domain, both of which are chosen from a library of possibilities. When two or more chimeras have the same DNA-binding domain, they independently and simultaneously regulate any promoter containing the appropriate operator site. In this manner, simple transcriptional AND gating is possible through the combination of two chimeras, and multiple-input AND gating is possible with the simultaneous use of three or even four chimeras. Furthermore, we demonstrate that orthogonal DNA-binding domains and their cognate operators allow the coexpression of multiple, orthogonal AND gates. Altogether, this work provides synthetic biologists with novel, ligand-inducible logic gates and greatly expands the possibilities for engineering complex synthetic gene circuits.
机译:在原核生物中,合成的多输入启动子的构建受到可同时调节单个启动子的转录因子数量的限制。这种基本的工程限制是合成生物学家的障碍,因为它限制了基因工程电路的计算能力。在这里,我们证明了复杂的多输入转录逻辑门控可以通过使用从LacI / GalR家族组装的配体诱导的嵌合转录因子来实现。这些模块化嵌合体各自包含配体结合结构域和DNA结合结构域,两者均选自可能的文库。当两个或多个嵌合体具有相同的DNA结合结构域时,它们独立且同时调节任何包含适当操纵子位点的启动子。以这种方式,通过两个嵌合体的组合可以进行简单的转录与门操作,同时使用三个或什至四个嵌合体可以进行多输入与门操作。此外,我们证明了正交的DNA结合结构域及其关联的运算符允许多个正交AND门的共表达。总而言之,这项工作为合成生物学家提供了新颖的,可诱导配体的逻辑门,并大大扩展了工程复杂的合成基因电路的可能性。

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